PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.103630.1
Common NameCsa_6G497120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 276aa    MW: 31893.5 Da    PI: 6.4098
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.103630.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-1095141455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++ErrRR++i++ f  L  l+P +      K +Ka++L  A++++k+Lq
  Cucsa.103630.1  95 EHVIAERRRREKIRQNFIALSALIPGL-----IKRDKASVLGGAIKFVKELQ 141
                     5999**********************9.....69*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-1490154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.78391140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1494159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-795141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.70E-1096145No hitNo description
SMARTSM003531.0E-1097146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MMECSYEYER MKKYPHDYTL DELNFPAMEK VNNSRSSGQL ISFGDYSGEI ENYKFDDYGN  60
LIGFEEEEHE IKKDYCSTII MGQLPNHNHN NNNSEHVIAE RRRREKIRQN FIALSALIPG  120
LIKRDKASVL GGAIKFVKEL QERLKWAEEK EKEQKRVIKS VVFVKTINLD SDFDNETFSL  180
DENGGRFSVR SVPTIETRVL EKDVLVRIHC KKHKGCYTSI VSEIEKLKLT IVNSCVFPFG  240
QSRLDITIIA EMEAGFCMTP MDLGKKLRET LIEFI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104ERRRRE
2100105RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-170LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-170LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143535.10.0PREDICTED: transcription factor bHLH25-like
TrEMBLA0A0A0KLM80.0A0A0A0KLM8_CUCSA; Uncharacterized protein
STRINGSolyc01g106460.2.12e-55(Solanum lycopersicum)
STRINGPGSC0003DMT4000130749e-55(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2469333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-50bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]